run_data_viewer()
Run the N2O data viewer
parse_file_names()
Parse the file names into categories
select_columns()
Select relevant data columns
select_N2O_peak()
Identify the N2O peak
set_background()
Set the bacterial background
set_oxidation_blank()
Set the oxdiation blank arae/volume
set_run_size()
Set the run size
change_category()
Change the category of specific analyses
Functions based on calculations.
correct_N2O_for_17O()
Correct N2O data for O17
evaluate_drift()
Evaluate drift
calculate_background()
Calculate background area
calculate_concentrations()
Calculate the concentrations of the source samples
calculate_oxidation_blank()
Calculate oxidation blank area/volume
calibrate_d15_org()
Calibrate organic d15 values with the given standards
calibrate_d15()
Calibrate d15 values with the given standards
calibrate_d18()
plot_overview()
make sure the last plot uses ggplot instead of plotly implementation
make_interactive()
Makes a ggplot interactive using ggplotly.
make_itext()
Generate more elaborate interactive hover text labels
generate_data_table()
Generate an overview table with the data
generate_parameter_table()
generate a summary of the parameters (lists all unique rows so make sure to group appropriately!)
default_cache_file()
default cache file name
get_calib_coef()
method making it easier to retrieve regression coefficients by name
get_isodat_data_tables()
Combine isodat files' data tables
load_cache()
store cach file
save_cache()
store cache file
load_run_folder()
Load raw run data
round_to_err()
error round
run_d15_calibration()
runs the d15 calibration internally called from calibrate_d15 and calibrate_d15_org